UASMAs (Universal Automated SNP Mapping Algorithms): a set of algorithms to instantaneously map SNPs in real time to aid functional SNP discovery

Summary: UASMAs integrate MAQ, BWT-SW, Bowtie, SOAP2, and BWA to automate real-time SNP localization by chromosome position. Bowtie/BWA components outperform BLAST on longer reads, improving recall and precision for accurate, deduplicated dbSNP ingestion. (summarized by gpt-5.6-luna on Jul 24 2026)

Paper ID: 10215
Venue: VLDB
Year: 2010
Pagerank: -
Overall Rank: 13,770 | 5.85%
DOI: 10.14778/1920841.1921013

Incoming Non-self Citations Over Time

No non-self incoming citations found for this paper in this database.

Authors

1. James T.L. Mah (Institute for Infocomm Research)
2. Danny C.C. Poo (National University of Singapore)
3. Shaojiang Cai (National University of Singapore)

BibTeX Citation

@article{mah_vldb10,
        title = {{UASMAs (Universal Automated SNP Mapping Algorithms): a set of algorithms to instantaneously map SNPs in real time to aid functional SNP discovery}},
        author = {Mah, James T.L. and Poo, Danny C.C. and Cai, Shaojiang},
        journal = {PVLDB},
        series = {{VLDB} '10},
        volume = {3},
        number = {2},
        pages = {1406--1409},
        doi = {10.14778/1920841.1921013},
        url = {https://doi.org/10.14778/1920841.1921013},
        year = {2010}
}

Incoming Citations (Sorted by Pagerank)

Showing 0 of 0 citing papers.

Rank	Citing Paper	Year	Venue	Pagerank

Outgoing Citations (Sorted by Pagerank)

Showing 0 of 0 cited papers.

Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.

Rank	Cited Paper	Year	Venue	Pagerank

Semantically Similar Papers

#	Overall Rank	Paper	Year	Venue
1	484	FastMap: A Fast Algorithm for Indexing, Data-Mining and Visualization of Traditional and Multimedia Datasets	1995	SIGMOD
2	14,167	A Database Platform for Bioinformatics	2000	VLDB
3	3,928	A Data Transformation System for Biological Data Sources	1995	VLDB
4	13,525	On the String Matching with k Differences in DNA Databases	2021	VLDB
5	12,854	Genomics Algebra: A New, Integrating Data Model, Language, and Tool for Processing and Querying Genomic Information	2003	CIDR
6	12,388	Massive Genomic Data Processing and Deep Analysis	2012	VLDB
7	8,836	ALAE: Accelerating Local Alignment with Affine Gap Exactly in Biosequence Databases	2012	VLDB
8	2,474	WHAM: A High-throughput Sequence Alignment Method	2011	SIGMOD
9	3,175	OASIS: An Online and Accurate Technique for Local-alignment Searches on Biological Sequences	2003	VLDB
10	6,213	Reference-Based Alignment in Large Sequence Databases	2009	VLDB