RCSI: Scalable similarity search in thousand(s) of genomes
Summary: RCSI scales exact k-approximate read search to thousands of genomes by referentially compressing them against a reference. Novel compressed structures and adaptive reference selection yield 26:1 index compression (450:1 overall) and ~15 ms queries. (summarized by gpt-5-nano on Feb 09 2026)
Incoming Non-self Citations Over Time
No non-self incoming citations found for this paper in this database.
Authors
- 1. Sebastian Wandelt
- 2. Johannes Starlinger
- 3. Marc Bux
- 4. Ulf Leser
Incoming Citations (Sorted by Pagerank)
Showing 1 of 1 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 11,956 | MRCSI: Compressing and Searching String Collections with Multiple References | 2015 | VLDB | 4.1945683e-05 |
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Outgoing Citations (Sorted by Pagerank)
Showing 6 of 6 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 1,396 | Can We Beat the Prefix Filtering? An Adaptive Framework for Similarity Join and Search | 2012 | SIGMOD | 0.00012204748 |
| 1,944 | WHAM: A High-throughput Sequence Alignment Method | 2011 | SIGMOD | 0.00010004608 |
| 3,578 | Efficient Approximate Entity Extraction with Edit Distance Constraints | 2009 | SIGMOD | 6.9503858e-05 |
| 5,812 | Reference-Based Alignment in Large Sequence Databases | 2009 | VLDB | 5.3172025e-05 |
| 6,983 | A Generic Framework for Efficient and Effective Subsequence Retrieval | 2012 | VLDB | 4.8732757e-05 |
| 8,306 | Online Windowed Subsequence Matching over Probabilistic Sequences | 2012 | SIGMOD | 4.5435639e-05 |
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| 11,956 | MRCSI: Compressing and Searching String Collections with Multiple References | 2015 | VLDB | 4.1945683e-05 |