Crimson: A Data Management System to Support Evaluating Phylogenetic Tree Reconstruction Algorithms
Summary: Crimson is a storage and indexing system for massive, deep phylogenetic trees, supporting structure-based rather than path-based queries. It enables expert-curated “gold standard” simulation trees to be sampled for systematic benchmarking of reconstruction algorithms. (summarized by gpt-5.6-luna on Jul 24 2026)
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Authors
- 1. Yifeng Zheng (University of Pennsylvania)
- 2. Stephen Fisher (University of Pennsylvania)
- 3. Shirley Cohen (University of Pennsylvania)
- 4. Sheng Guo (University of Pennsylvania)
- 5. Junhyong Kim (University of Pennsylvania)
- 6. Susan B. Davidson (University of Pennsylvania)
BibTeX Citation
@article{zheng_vldb06,
title = {{Crimson: A Data Management System to Support Evaluating Phylogenetic Tree Reconstruction Algorithms}},
author = {Zheng, Yifeng and Fisher, Stephen and Cohen, Shirley and Guo, Sheng and Kim, Junhyong and Davidson, Susan B.},
journal = {PVLDB},
series = {{VLDB} '06},
pages = {1231--1234},
year = {2006}
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| 1,204 | A Comprehensive XQuery to SQL Translation using Dynamic Interval Encoding | 2003 | SIGMOD | 0.00011664562 |
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