Building Highly-Optimized, Low-Latency Pipelines for Genomic Data Analysis
Summary: End-to-end system that applies a principled optimization framework plus a parallel execution platform to transform long-running, deep genomic analysis pipelines into highly-optimized, low-latency workflows. Validated on NY Genome Center workloads to cut multi-day runtimes for clinical-scale sequencing. (summarized by gpt-5-mini on Feb 09 2026)
Incoming Non-self Citations Over Time
Authors
- 1. Yanlei Diao
- 2. Abhishek Roy
- 3. Toby Bloom
Incoming Citations (Sorted by Pagerank)
Showing 2 of 2 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 3,060 | Rethinking Data-Intensive Science Using Scalable Analytics Systems | 2015 | SIGMOD | 7.639315e-05 |
| 11,798 | Massively Parallel Processing of Whole Genome Sequence Data: An In-Depth Performance Study | 2017 | SIGMOD | 4.1905499e-05 |
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Outgoing Citations (Sorted by Pagerank)
Showing 8 of 8 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 3 | Pig Latin: A Not-So-Foreign Language for Data Processing | 2008 | SIGMOD | 0.0024217964 |
| 42 | A Comparison of Approaches to Large-Scale Data Analysis | 2009 | SIGMOD | 0.00073570328 |
| 602 | Mining Quantitative Association Rules in Large Relational Tables | 1996 | SIGMOD | 0.00019350521 |
| 909 | Tenzing A SQL Implementation On The MapReduce Framework | 2011 | VLDB | 0.0001540191 |
| 1,947 | WHAM: A High-throughput Sequence Alignment Method | 2011 | SIGMOD | 9.9963826e-05 |
| 2,441 | CoHadoop: Flexible Data Placement and Its Exploitation in Hadoop | 2011 | VLDB | 8.8106295e-05 |
| 2,476 | A Platform for Scalable One-Pass Analytics using MapReduce | 2011 | SIGMOD | 8.6907971e-05 |
| 12,147 | Massive Genomic Data Processing and Deep Analysis | 2012 | VLDB | 4.1905499e-05 |
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