ALAE: Accelerating Local Alignment with Affine Gap Exactly in Biosequence Databases
Summary: ALAE speeds up local alignment with affine gaps by extending BWT-SW with a compressed suffix array, filtering, and score reuse. It yields upper-bound analysis, shows speedups over BWT-SW, and preserves correctness while speeding BLAST for many params. (summarized by gpt-5-nano on Feb 09 2026)
Incoming Non-self Citations Over Time
Authors
- 1. Xiaochun Yang
- 2. Honglei Liu
- 3. Bin Wang
Incoming Citations (Sorted by Pagerank)
Showing 2 of 2 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 5,291 | Fast Subtrajectory Similarity Search in Road Networks under Weighted Edit Distance Constraints | 2020 | VLDB | 5.5826473e-05 |
| 6,074 | Pigeonring: A Principle for Faster Thresholded Similarity Search | 2019 | VLDB | 5.2242306e-05 |
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Outgoing Citations (Sorted by Pagerank)
Showing 1 of 1 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 2,497 | OASIS: An Online and Accurate Technique for Local-alignment Searches on Biological Sequences | 2003 | VLDB | 8.6472036e-05 |
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