Crimson: A Data Management System to Support Evaluating Phylogenetic Tree Reconstruction Algorithms
Summary: Crimson: a tree-storage system for massive phylogenetic trees used to benchmark reconstruction algorithms in CIPRes. It emphasizes structure queries over path queries; scalable storage and indexing support gold-standard tree models for rapid phylogeny benchmarking. (summarized by gpt-5-nano on Feb 09 2026)
Incoming Non-self Citations Over Time
No non-self incoming citations found for this paper in this database.
Authors
- 1. Yifeng Zheng
- 2. Stephen Fisher
- 3. Shirley Cohen
- 4. Sheng Guo
- 5. Junhyong Kim
- 6. Susan B. Davidson
Incoming Citations (Sorted by Pagerank)
Showing 0 of 0 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|
Previous
Page 1 / 1
Next
Outgoing Citations (Sorted by Pagerank)
Showing 1 of 1 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 1,149 | A Comprehensive XQuery to SQL Translation using Dynamic Interval Encoding | 2003 | SIGMOD | 0.00013649094 |
Previous
Page 1 / 1
Next
Semantically Similar Papers
| Overall Rank | Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 8,374 | LCS-TRIM: Dynamic Programming Meets XML Indexing and Querying | 2007 | VLDB | 4.5282277e-05 |
| 2,862 | Efficient Processing of Expressive Node-Selecting Queries on XML Data in Secondary Storage: A Tree Automata-based Approach | 2003 | VLDB | 7.9982917e-05 |
| 3,206 | Similarity Evaluation on Tree-structured Data | 2005 | SIGMOD | 7.3855924e-05 |
| 3,530 | RE-Tree: An Efficient Index Structure for Regular Expressions | 2002 | VLDB | 7.0008977e-05 |
| 5,614 | TIMBER: A Native System for Querying XML | 2003 | SIGMOD | 5.4098571e-05 |
| 1,274 | The Data Civilizer System | 2017 | CIDR | 0.00012869297 |
| 1,236 | Minimization of Tree Pattern Queries | 2001 | SIGMOD | 0.00013107769 |
| 1,115 | A Database Index to Large Biological Sequences | 2001 | VLDB | 0.00013865352 |
| 13,443 | Mobile Interaction and Query Optimization in a Protein-Ligand Data Analysis System | 2013 | SIGMOD | - |
| 2,251 | Genome-scale Disk-based Suffix Tree Indexing | 2007 | SIGMOD | 9.1921005e-05 |