Periscope/SQ: Interactive Exploration of Biological Sequence Databases
Summary: Periscope/SQ provides a declarative interface for large biological sequence databases, enabling rapid expression of complex queries. It leverages database-style optimization to deliver orders-of-magnitude speedups over procedural approaches, demonstrated by GeneLocator for interactive exploration. (summarized by gpt-5-nano on Feb 09 2026)
Incoming Non-self Citations Over Time
Authors
- 1. Sandeep Tata
- 2. Willis Lang
- 3. Jignesh M. Patel
Incoming Citations (Sorted by Pagerank)
Showing 1 of 1 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 11,931 | StarDB: A Large-Scale DBMS for Strings | 2015 | VLDB | 4.1945683e-05 |
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Outgoing Citations (Sorted by Pagerank)
Showing 0 of 0 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|
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Semantically Similar Papers
| Overall Rank | Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 994 | Assisted Querying using Instant-Response Interfaces | 2007 | SIGMOD | 0.00014755845 |
| 625 | Sequence Query Processing | 1994 | SIGMOD | 0.00018980669 |
| 8,477 | SQALPEL: A database performance platform | 2019 | CIDR | 4.5019818e-05 |
| 666 | The Design and Implementation of a Sequence Database System | 1996 | VLDB | 0.00018449748 |
| 5,769 | DataScope: Viewing Database Contents in Google Maps’ Way | 2007 | VLDB | 5.3333819e-05 |
| 13,915 | A Database Platform for Bioinformatics | 2000 | VLDB | - |
| 2,017 | The Researcher’s Guide to the Data Deluge: Querying a Scientific Database in Just a Few Seconds | 2011 | VLDB | 9.7810458e-05 |
| 1,909 | SciBORQ: Scientific data management with Bounds On Runtime and Quality | 2011 | CIDR | 0.00010121304 |
| 7,325 | Periscope/GQ: A Graph Querying Toolkit | 2008 | VLDB | 4.7616954e-05 |
| 12,648 | Searching on the Secondary Structure of Protein Sequences | 2002 | VLDB | 4.1945683e-05 |