bdbms – A Database Management System for Biological Data
Summary: bdbms is an extensible prototype DBMS for biological data that treats annotations and provenance as first-class objects, adds local dependency tracking for derivations, content-based update authorization, and pattern-matching access methods for compressed sequences. Introduces A-SQL to query/propagate annotations/provenance and integrates storage, indexing and manipulation primitives to support community curation and evolving semantics. (summarized by gpt-5-mini on Feb 09 2026)
Incoming Non-self Citations Over Time
Authors
- 1. Mohamed Y. Eltabakh (Purdue University)
- 2. Mourad Ouzzani (Purdue University)
- 3. Walid G. Aref (Purdue University)
BibTeX Citation
@inproceedings{eltabakh_cidr07,
address = {Amsterdam, Netherlands},
series = {{CIDR} '07},
title = {{bdbms – A Database Management System for Biological Data}},
booktitle = {Proceedings of the {Conference} on {Innovative} {Data} {Systems} {Research}},
author = {Eltabakh, Mohamed Y. and Ouzzani, Mourad and Aref, Walid G.},
year = {2007}
}Incoming Citations (Sorted by Pagerank)
Showing 4 of 4 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 1,785 | Approximate Lineage for Probabilistic Databases | 2008 | VLDB | 9.6482655e-05 |
| 5,713 | Believe It or Not: Adding Belief Annotations to Databases | 2009 | VLDB | 6.0216473e-05 |
| 12,400 | Even Metadata is Getting Big: Annotation Summarization using InsightNotes | 2015 | SIGMOD | 4.9793485e-05 |
| 12,815 | Tagging Stream Data for Rich Real-Time Services | 2009 | VLDB | 4.9793485e-05 |
Previous
Page 1 / 1
Next
Outgoing Citations (Sorted by Pagerank)
Showing 9 of 9 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 12 | C-Store: A Column-oriented DBMS | 2005 | VLDB | 0.00068998927 |
| 525 | An Annotation Management System for Relational Databases | 2004 | VLDB | 0.00016890994 |
| 590 | On Propagation of Deletions and Annotations Through Views | 2002 | PODS | 0.00015890019 |
| 591 | Lineage Tracing for General Data Warehouse Transformations | 2001 | VLDB | 0.00015888097 |
| 608 | An Authorization Mechanism for a Relational Data Base System | 1976 | SIGMOD | 0.00015599661 |
| 1,588 | DBNotes: A Post-It System for Relational Databases based on Provenance | 2005 | SIGMOD | 0.00010140362 |
| 2,170 | Provenance Management in Curated Databases | 2006 | SIGMOD | 8.924429e-05 |
| 7,412 | A Population Analysis for Hierarchical Data Structures | 1987 | SIGMOD | 5.5342698e-05 |
| 9,006 | Biological Data Management: Research, Practice and Opportunities | 2004 | VLDB | 5.2388262e-05 |
Previous
Page 1 / 1
Next
Semantically Similar Papers
| # | Overall Rank | Paper | Year | Venue |
|---|---|---|---|---|
| 1 | 1,164 | A Case for A Collaborative Query Management System | 2009 | CIDR |
| 2 | 1,412 | Characteristics of Scientific Databases | 1984 | VLDB |
| 3 | 1,588 | DBNotes: A Post-It System for Relational Databases based on Provenance | 2005 | SIGMOD |
| 4 | 6,807 | Database Challenges in the Integration of Biomedical Data Sets | 2004 | VLDB |
| 5 | 1,925 | Here are my Data Files. Here are my Queries. Where are my Results? | 2011 | CIDR |
| 6 | 14,427 | A Database Platform for Bioinformatics | 2000 | VLDB |
| 7 | 12,673 | DBWiki: A Structured Wiki for Curated Data and Collaborative Data Management | 2011 | SIGMOD |
| 8 | 9,006 | Biological Data Management: Research, Practice and Opportunities | 2004 | VLDB |
| 9 | 525 | An Annotation Management System for Relational Databases | 2004 | VLDB |
| 10 | 2,170 | Provenance Management in Curated Databases | 2006 | SIGMOD |