Building Highly-Optimized, Low-Latency Pipelines for Genomic Data Analysis
Summary: End-to-end system that applies a principled optimization framework plus a parallel execution platform to transform long-running, deep genomic analysis pipelines into highly-optimized, low-latency workflows. Validated on NY Genome Center workloads to cut multi-day runtimes for clinical-scale sequencing. (summarized by gpt-5-mini on Feb 09 2026)
Incoming Non-self Citations Over Time
Authors
- 1. Yanlei Diao (University of Massachusetts Amherst)
- 2. Abhishek Roy (University of Massachusetts Amherst)
- 3. Toby Bloom (New York Genome Center)
BibTeX Citation
@inproceedings{diao_cidr15,
address = {Amsterdam, Netherlands},
series = {{CIDR} '15},
title = {{Building Highly-Optimized, Low-Latency Pipelines for Genomic Data Analysis}},
booktitle = {Proceedings of the {Conference} on {Innovative} {Data} {Systems} {Research}},
author = {Diao, Yanlei and Roy, Abhishek and Bloom, Toby},
year = {2015}
}Incoming Citations (Sorted by Pagerank)
Showing 2 of 2 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 3,537 | Rethinking Data-Intensive Science Using Scalable Analytics Systems | 2015 | SIGMOD | 7.2010811e-05 |
| 12,341 | Massively Parallel Processing of Whole Genome Sequence Data: An In-Depth Performance Study | 2017 | SIGMOD | 4.9605343e-05 |
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Outgoing Citations (Sorted by Pagerank)
Showing 8 of 8 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 6 | Pig Latin: A Not-So-Foreign Language for Data Processing | 2008 | SIGMOD | 0.0010494385 |
| 43 | A Comparison of Approaches to Large-Scale Data Analysis | 2009 | SIGMOD | 0.00045453255 |
| 622 | Mining Quantitative Association Rules in Large Relational Tables | 1996 | SIGMOD | 0.00015452634 |
| 876 | Tenzing: A SQL Implementation On The MapReduce Framework | 2011 | VLDB | 0.00013272245 |
| 2,299 | A Platform for Scalable One-Pass Analytics using MapReduce | 2011 | SIGMOD | 8.6639611e-05 |
| 2,518 | WHAM: A High-throughput Sequence Alignment Method | 2011 | SIGMOD | 8.3402791e-05 |
| 2,699 | CoHadoop: Flexible Data Placement and Its Exploitation in Hadoop | 2011 | VLDB | 8.100024e-05 |
| 12,675 | Massive Genomic Data Processing and Deep Analysis | 2012 | VLDB | 4.9605343e-05 |
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