GenBase: A Complex Analytics Genomics Benchmark

Summary: GenBase presents a mixed-workload benchmark combining DBMS tasks (joins, filters) with genomics analytics (regression, SVD). Evaluates row/column stores, Hadoop, and array DBMS on single and multi-node clusters, exposing scalability issues; data and tools released. (summarized by gpt-5-nano on Feb 09 2026)

Paper ID: he057d57e48371b4b
Venue: SIGMOD
Year: 2014
Pagerank: 7.7595064e-05
Overall Rank: 3,008 | 79.78%
DOI: 10.1145/2558895.2559633

Incoming Non-self Citations Over Time

Authors

1. Rebecca Taft (Massachusetts Institute of Technology)
2. Manasi Vartak (Massachusetts Institute of Technology)
3. Nadathur Rajagopalan Satish (Intel)
4. Narayanan Sundaram (Intel)
5. Samuel Madden (Massachusetts Institute of Technology)
6. Michael Stonebraker (Massachusetts Institute of Technology)

BibTeX Citation

@inproceedings{taft_sigmod14,
        title = {{GenBase: A Complex Analytics Genomics Benchmark}},
        author = {Taft, Rebecca and Vartak, Manasi and Satish, Nadathur Rajagopalan and Sundaram, Narayanan and Madden, Samuel and Stonebraker, Michael},
        series = {{SIGMOD} '14},
        booktitle = {Proceedings of the {ACM} {SIGMOD} International Conference on Management of Data},
        publisher = {Association for Computing Machinery},
        doi = {10.1145/2558895.2559633},
        url = {https://dl.acm.org/doi/10.1145/2558895.2559633},
        year = {2014}
}

Incoming Citations (Sorted by Pagerank)

Showing 11 of 11 citing papers.

Rank	Citing Paper	Year	Venue	Pagerank
1,255	Data Management in Machine Learning: Challenges, Techniques, and Systems	2017	SIGMOD	0.00011325762
1,608	Dynamic Prefetching of Data Tiles for Interactive Visualization	2016	SIGMOD	0.00010084292
3,518	A Comparative Evaluation of Systems for Scalable Linear Algebra-based Analytics	2018	VLDB	7.2400627e-05
4,308	Comparative Evaluation of Big-Data Systems on Scientific Image Analytics Workloads	2017	VLDB	6.6735191e-05
5,352	Progressive Top-k Subarray Query Processing in Array Databases	2019	VLDB	6.1640095e-05
5,666	Skew-Aware Join Optimization for Array Databases	2015	SIGMOD	6.0462129e-05
6,343	ESTOCADA: Towards Scalable Polystore Systems	2020	VLDB	5.8092399e-05
6,662	UPLIFT: Parallelization Strategies for Feature Transformations in Machine Learning Workloads	2022	VLDB	5.7171651e-05
7,459	M2Bench: A Database Benchmark for Multi-Model Analytic Workloads	2023	VLDB	5.5217718e-05
8,759	VeriBench: Analyzing the Performance of Database Systems with Verifiability	2023	VLDB	5.283718e-05
12,292	Massively Parallel Processing of Whole Genome Sequence Data: An In-Depth Performance Study	2017	SIGMOD	4.9793485e-05

Outgoing Citations (Sorted by Pagerank)

Showing 4 of 4 cited papers.

Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.

Rank	Cited Paper	Year	Venue	Pagerank
46	Benchmarking Database Systems: A Systematic Approach	1983	VLDB	0.00044784799
105	The MADlib Analytics Library or MAD Skills, the SQL	2012	VLDB	0.00033638251
594	Linear Road: A Stream Data Management Benchmark	2004	VLDB	0.00015823573
4,562	The BUCKY Object-Relational Benchmark	1997	SIGMOD	6.5337025e-05

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