Serial and Parallel Methods for I/O Efficient Suffix Tree Construction
Summary: Suffix-tree construction re-architected as a tiled, constant-working-set workflow for I/O-efficient scaling beyond main memory. On massively parallel platforms (Blue Gene/L), locality-aware design and efficient communication yield major speedups, indexing the human genome on 1024 CPUs in under 15 minutes. (summarized by gpt-5-nano on Feb 09 2026)
Incoming Non-self Citations Over Time
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Incoming Citations (Sorted by Pagerank)
Showing 2 of 2 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 6,319 | ERA: Efficient Serial and Parallel Suffix Tree Construction for Very Long Strings | 2012 | VLDB | 5.1132714e-05 |
| 12,100 | RACE: A Scalable and Elastic Parallel System for Discovering Repeats in Very Long Sequences | 2013 | VLDB | 4.1945683e-05 |
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Outgoing Citations (Sorted by Pagerank)
Showing 3 of 3 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 1,118 | A Database Index to Large Biological Sequences | 2001 | VLDB | 0.00013879121 |
| 2,250 | Genome-scale Disk-based Suffix Tree Indexing | 2007 | SIGMOD | 9.2009942e-05 |
| 2,497 | OASIS: An Online and Accurate Technique for Local-alignment Searches on Biological Sequences | 2003 | VLDB | 8.6472036e-05 |
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