bdbms – A Database Management System for Biological Data
Summary: bdbms is an extensible prototype DBMS for biological data that treats annotations and provenance as first-class objects, adds local dependency tracking for derivations, content-based update authorization, and pattern-matching access methods for compressed sequences. Introduces A-SQL to query/propagate annotations/provenance and integrates storage, indexing and manipulation primitives to support community curation and evolving semantics. (summarized by gpt-5-mini on Feb 09 2026)
Incoming Non-self Citations Over Time
Authors
- 1. Mohamed Y. Eltabakh (Purdue University)
- 2. Mourad Ouzzani (Purdue University)
- 3. Walid G. Aref (Purdue University)
BibTeX Citation
@inproceedings{eltabakh_cidr07,
address = {Amsterdam, Netherlands},
series = {{CIDR} '07},
title = {{bdbms – A Database Management System for Biological Data}},
booktitle = {Proceedings of the {Conference} on {Innovative} {Data} {Systems} {Research}},
author = {Eltabakh, Mohamed Y. and Ouzzani, Mourad and Aref, Walid G.},
year = {2007}
}Incoming Citations (Sorted by Pagerank)
Showing 4 of 4 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 1,752 | Approximate Lineage for Probabilistic Databases | 2008 | VLDB | 9.8358116e-05 |
| 5,586 | Believe It or Not: Adding Belief Annotations to Databases | 2009 | VLDB | 6.1598576e-05 |
| 12,107 | Even Metadata is Getting Big: Annotation Summarization using InsightNotes | 2015 | SIGMOD | 5.093636e-05 |
| 12,525 | Tagging Stream Data for Rich Real-Time Services | 2009 | VLDB | 5.093636e-05 |
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Outgoing Citations (Sorted by Pagerank)
Showing 9 of 9 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 12 | C-Store: A Column-oriented DBMS | 2005 | VLDB | 0.00069513174 |
| 531 | An Annotation Management System for Relational Databases | 2004 | VLDB | 0.00017083233 |
| 585 | Lineage Tracing for General Data Warehouse Transformations | 2001 | VLDB | 0.00016139897 |
| 595 | An Authorization Mechanism for a Relational Data Base System | 1976 | SIGMOD | 0.000159408 |
| 620 | On Propagation of Deletions and Annotations Through Views | 2002 | PODS | 0.00015703409 |
| 1,571 | DBNotes: A Post-It System for Relational Databases based on Provenance | 2005 | SIGMOD | 0.00010330864 |
| 2,134 | Provenance Management in Curated Databases | 2006 | SIGMOD | 9.1154913e-05 |
| 7,262 | A Population Analysis for Hierarchical Data Structures | 1987 | SIGMOD | 5.6612247e-05 |
| 8,839 | Biological Data Management: Research, Practice and Opportunities | 2004 | VLDB | 5.3590142e-05 |
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| 9 | 531 | An Annotation Management System for Relational Databases | 2004 | VLDB |
| 10 | 2,134 | Provenance Management in Curated Databases | 2006 | SIGMOD |