bdbms – A Database Management System for Biological Data
Summary: bdbms is an extensible prototype DBMS for biological data that treats annotations and provenance as first-class objects, adds local dependency tracking for derivations, content-based update authorization, and pattern-matching access methods for compressed sequences. Introduces A-SQL to query/propagate annotations/provenance and integrates storage, indexing and manipulation primitives to support community curation and evolving semantics. (summarized by gpt-5-mini on Feb 09 2026)
Incoming Non-self Citations Over Time
Authors
Incoming Citations (Sorted by Pagerank)
Showing 4 of 4 citing papers.
| Rank | Citing Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 1,970 | Approximate Lineage for Probabilistic Databases | 2008 | VLDB | 9.896375e-05 |
| 5,823 | Believe It or Not: Adding Belief Annotations to Databases | 2009 | VLDB | 5.3129967e-05 |
| 11,908 | Even Metadata is Getting Big: Annotation Summarization using InsightNotes | 2015 | SIGMOD | 4.1945683e-05 |
| 12,331 | Tagging Stream Data for Rich Real-Time Services | 2009 | VLDB | 4.1945683e-05 |
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Outgoing Citations (Sorted by Pagerank)
Showing 9 of 9 cited papers.
Citations counted here include only citations to other VLDB/SIGMOD/CIDR/PODS papers in this database.
| Rank | Cited Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 21 | C-Store: A Column-oriented DBMS | 2005 | VLDB | 0.00086087497 |
| 235 | An Authorization Mechanism for a Relational Data Base System | 1976 | SIGMOD | 0.00031992425 |
| 561 | An Annotation Management System for Relational Databases | 2004 | VLDB | 0.00020115419 |
| 611 | Lineage Tracing for General Data Warehouse Transformations | 2001 | VLDB | 0.00019231115 |
| 655 | On Propagation of Deletions and Annotations Through Views | 2002 | PODS | 0.00018608845 |
| 1,824 | DBNotes: A Post-It System for Relational Databases based on Provenance | 2005 | SIGMOD | 0.00010405194 |
| 2,524 | Provenance Management in Curated Databases | 2006 | SIGMOD | 8.6017899e-05 |
| 5,726 | Biological Data Management: Research, Practice and Opportunities | 2004 | VLDB | 5.3513474e-05 |
| 7,284 | A Population Analysis for Hierarchical Data Structures | 1987 | SIGMOD | 4.7764316e-05 |
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Semantically Similar Papers
| Overall Rank | Paper | Year | Venue | Pagerank |
|---|---|---|---|---|
| 711 | A Case for A Collaborative Query Management System | 2009 | CIDR | 0.00017751589 |
| 743 | Characteristics of Scientific Databases | 1984 | VLDB | 0.00017348417 |
| 1,824 | DBNotes: A Post-It System for Relational Databases based on Provenance | 2005 | SIGMOD | 0.00010405194 |
| 6,414 | Database Challenges in the Integration of Biomedical Data Sets | 2004 | VLDB | 5.0735389e-05 |
| 2,367 | Here are my Data Files. Here are my Queries. Where are my Results? | 2011 | CIDR | 8.9511058e-05 |
| 13,915 | A Database Platform for Bioinformatics | 2000 | VLDB | - |
| 12,187 | DBWiki: A Structured Wiki for Curated Data and Collaborative Data Management | 2011 | SIGMOD | 4.1945683e-05 |
| 5,726 | Biological Data Management: Research, Practice and Opportunities | 2004 | VLDB | 5.3513474e-05 |
| 561 | An Annotation Management System for Relational Databases | 2004 | VLDB | 0.00020115419 |
| 2,524 | Provenance Management in Curated Databases | 2006 | SIGMOD | 8.6017899e-05 |